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APCF presents a comprehensive proteomics data analysis course in Sydney, Sept 14 2010

The Australian Proteomics Computational Facility is proud to present a 4 full day comprehensive proteomics data analysis course in Sydney, Sept 14 2010. The course will be held prior to HUPO 2010 at the University of New South Wales and will be conducted by many of the authors of the Trans-Proteomic Pipeline as well as staff of the APCF. As the TPP is incorporated onto the APCF system through the APCF unique UNITE interface, this is a perfect opportunity to get extensive in-depth training on the software and its use.

Agenda for APCF Trans-Proteomic Pipeline 4-day course:

Tuesday:

  • Introduction and sequence database searching
  • TPP user interface introduction, data formats & conversion utilities
  • TPP installation and support & clinic
Wednesday:
  • Post-search validation with PeptideProphet & Pep3D
  • Improving search result discrimination with InterProphet
  • Protein inference and scoring with ProteinProphet
Thursday:
  • Quantification with XPRESS, ASAPRatio, Libra
  • Spectral Library searching with SpectraST
  • MS1 data analysis with Corra
Friday:
  • The PeptideAtlas and MRMAtlas public resources
  • Targeted proteomics with TIQAM and ATAQS
  • Australian Proteomics Computational Facility
A flier for this course can be downloaded here.

To book for the course, please go to the HUPO 2010 website at www.hupo2010.com/course.htm

Welcome to the Australian Proteomics Computational Facility

In recent years, Australia has invested in equipment capable of identifying proteins important in health and medicine. This sophisticated equipment requires high capacity computing support. The Australian Proteomics Computational Facility has been established to provide a single advanced computing cluster accessible to scientists at proteomics centres all over the country. This integrated approach to proteomics computing and the sharing of databases will put Australia at the forefront of the world's efforts to identify the proteins associated with the early detection of our major diseases.


This facility is funded by the Australian National Health and Medical Research Council (grant number 381413), under the Enabling Grant scheme for providing support for a high quality, world-class computational research facility that will enhance the national health and medical research effort.

Algorithms

APCF UNITE

UNITE Task Window UNITE is a world-first tool that allows Proteomics researchers to seamlessly access multiple industry-standard MS/MS databases and searching algorithms remotely and simultaneously at the facilities of the APCF. It provides single-click access to Mascot, X!!Tandem and OMSSA. It allows proteomics researchers to harness the power of the APCF cluster from their desktop, as well as providing easy-to-use automation tools such as raw file conversion, and the mass download of result files.

Contact us

For use of the APCF system, or questions on specific requirements, please contact the APCF by:

   Email:
   or by phone: APCF Duty Programmer on +61-3-9341-3155